Handling Multiple Shipments for a Credit Card Order

Enter a new order and click Authorize Credit Card. This indicates that the order is to be paid by credit card, and all future invoices generated from the order will attempt to charge the same card.
On the Credit Card Payment Information form, specify the appropriate information.

See Adding Customer Credit Card Information. Then authorize the credit card according to the pre-authorization method your system uses. For more information, see Pre-authorizing Credit Card Amounts or Percentages.
Partially ship the order in the system.
Perform another partial shipment to complete the same order.
To charge the credit card for the amount due, run order invoicing.